Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | N824_17700 | Not Available | + | 1484043 - 1484771 | 27175.8 |
| gliding motility protein | N824_17705 | Not Available | + | 1484765 - 1486447 | 62685.0 |
| dna polymerase iii subunit beta | N824_17710 | Not Available | + | 1486482 - 1487606 | 41290.3 |
| hypothetical protein | N824_17715 | Not Available | + | 1487682 - 1488365 | 24345.9 |
| membrane protein | N824_17720 | Not Available | + | 1488447 - 1489103 | 24781.1 |
| heat shock protein hsp70 | N824_17725 | Not Available | - | 1489395 - 1491254 | 67863.2 |
| hypothetical protein | N824_17730 | Not Available | - | 1491347 - 1492459 | 42318.6 |
| hypothetical protein | N824_17735 | Not Available | - | 1492571 - 1493644 | 41470.7 |
| dihydroorotase | N824_17740 | Not Available | - | 1493644 - 1494978 | 49767.8 |
| dead/deah box helicase | N824_17745 | Not Available | + | 1495148 - 1496470 | 49453.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.