Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_17550 | Not Available | - | 1450140 - 1451156 | 38950.9 |
| hypothetical protein | N824_17555 | Not Available | + | 1451312 - 1451899 | 20213.2 |
| hypothetical protein | N824_17560 | Not Available | + | 1452011 - 1452292 | 10672.9 |
| ribonuclease | N824_17565 | Not Available | - | 1452289 - 1453182 | 33795.6 |
| 4-hydroxyphenylpyruvate dioxygenase | N824_17570 | Not Available | - | 1453250 - 1454380 | 42605.3 |
| homogentisate 1,2-dioxygenase | N824_17575 | Not Available | - | 1454419 - 1455585 | 44798.1 |
| fumarylacetoacetate hydrolase | N824_17580 | Not Available | + | 1455916 - 1456914 | 36772.9 |
| flavin reductase | N824_17585 | Not Available | + | 1457012 - 1457848 | 29585.8 |
| hydrolase | N824_17590 | Not Available | - | 1457843 - 1458385 | 19972.0 |
| short-chain dehydrogenase | N824_17595 | Not Available | - | 1458448 - 1459149 | 25100.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.