Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_17250 | Not Available | + | 1379054 - 1379149 | 3578.55 |
| cell division protein mraz | N824_17255 | Not Available | + | 1379192 - 1379665 | 17913.7 |
| 16s rrna methyltransferase | N824_17260 | Not Available | + | 1379655 - 1380560 | 33898.7 |
| hypothetical protein | N824_17265 | Not Available | + | 1380557 - 1380967 | 15899.3 |
| cell division protein | N824_17270 | Not Available | + | 1380957 - 1383053 | 76673.5 |
| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase | N824_17275 | Not Available | + | 1383055 - 1384512 | 53203.0 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | N824_17280 | Not Available | + | 1384512 - 1385783 | 47352.2 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | N824_17285 | Not Available | + | 1385783 - 1387126 | 49657.4 |
| cell division protein | N824_17290 | Not Available | + | 1387130 - 1388296 | 42448.8 |
| udp-diphospho-muramoylpentapeptide beta-n- acetylglucosaminyltransferase | N824_17295 | Not Available | + | 1388306 - 1389421 | 39863.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.