Thermoanaerobacter brockii subsp. finnii Ako-1

Gram-positiveBacilliMotileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Thermoanaerobacterales

Family

Thermoanaerobacteraceae

Genus

Thermoanaerobacter

Description

Rising global demand for energy coupled with recent supply-side instability in the petroleum market have prompted renewed calls for the development of alternative fuel sources to reduce America's dependence on foreign oil. One such alternative, bioproduced ethanol derived from cellulosic plant materials is a primary alternative for immediate and long-term replacement of fossil fuels. Clostridia are chosen for their proven ability to degrade complex cellulosic polymers, to ferment a variety of cellulosic degradation byproducts to ethanol and to produce beneficial industrial compounds in addition to ethanol. Thermoanaerobacter brockii subsp. finnii (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) is an anaerobic Gram-positive bacterium isolated from lake sediment sludge in Africa. It is an efficient producer of ethanol from xylose. Ethanol is the major end product of fermentation from glucose and xylose, but switches to acetate under thiosulfate-respiring conditions. Respiration of thiosulfate is accompanied by increased growth rates and yields, suggesting an increased rate of substrate-level phosphorylation. In addition, thiosulfate reduction can be linked to H2 oxidation which serves to alleviate the toxic effects of H2 concentrations. As such, thiosulfate- reducing species may play a significant role in carbon flux in sulfidogenic environments. (Adapted from: http://genome.jgi-psf.org/thebr/thebr.home.html). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderThermoanaerobacterales
FamilyThermoanaerobacteraceae
GenusThermoanaerobacter
SpeciesThermoanaerobacter brockii
StrainAko-1

Profile

Physiology
Gram staining propertiesPositive
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Thermoanaerobacter brockii subsp. finnii Ako-1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature65
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Thermoanaerobacter brockii subsp. finnii Ako-1

Accession NumberNC_014964.1

Gene Summary

Adenine Count

772018 bp

Thymine Count

763751 bp

Guanine Count

408824 bp

Cytosine Count

400231 bp

Genome Length

2344824 bp

Protein-coding Genes

2313 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
peptidoglycan dd-metalloendopeptidase family proteinTHEBR_RS00535Not Available+97043 - 9840150701.3
peptidase ma family metallohydrolaseTHEBR_RS00540Not Available+98579 - 9938531028.2
udp-n-acetylglucosamine 1-carboxyvinyltransferaseTHEBR_RS00545Q8R6V0+99531 - 10078445096.4
s1c family serine proteaseTHEBR_RS00550P73354+100850 - 10195339731.4
cxxh/cxxc proteinTHEBR_RS11670Not Available+101964 - 1021316578.78
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhTHEBR_RS00555B0KB08+102149 - 10261618072.2
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhTHEBR_RS00560B0K568-102607 - 10300815421.6
tyrosine--trna ligaseTHEBR_RS00565Q8R6V5+103140 - 10436046449.4
hypothetical proteinTHEBR_RS12315Not Available+104375 - 1046179953.9
hypothetical proteinTHEBR_RS12320Not Available+104624 - 1048036949.35

Displaying genes 111 – 120 of 2386 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

118 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 118 metabolites