Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribbon-helix-helix protein, copg family | OCA5_RS02675 | Not Available | + | 560045 - 560503 | 16453.7 |
| p-type conjugative transfer atpase trbb | OCA5_RS02680 | Not Available | + | 560649 - 561632 | 34301.4 |
| trbc/virb2 family protein | OCA5_RS02685 | Not Available | + | 561629 - 561961 | 11654.5 |
| virb3 family type iv secretion system protein | OCA5_RS02690 | Not Available | + | 561961 - 562242 | 9964.42 |
| conjugal transfer protein trbe | OCA5_RS02695 | Not Available | + | 562257 - 564713 | 89696.1 |
| p-type conjugative transfer protein trbj | OCA5_RS02700 | Not Available | + | 564710 - 565468 | 27240.6 |
| putative entry exclusion protein trbk-alt | OCA5_RS02705 | Not Available | + | 565490 - 565780 | 10509.5 |
| p-type conjugative transfer protein trbl | OCA5_RS02710 | Not Available | + | 565780 - 567126 | 44452.6 |
| conjugal transfer protein trbf | OCA5_RS02715 | Not Available | + | 567123 - 567812 | 25803.5 |
| p-type conjugative transfer protein trbg | OCA5_RS02720 | Not Available | + | 567809 - 568765 | 34297.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.