Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| copper-binding protein | OCA5_RS02630 | Not Available | - | 546979 - 547389 | 14017.9 |
| efflux rnd transporter permease subunit | OCA5_RS02635 | Not Available | - | 547539 - 550739 | 115721.0 |
| efflux rnd transporter periplasmic adaptor subunit | OCA5_RS02640 | Not Available | - | 550736 - 552256 | 54636.1 |
| hypothetical protein | OCA5_RS02645 | Not Available | - | 552582 - 552851 | 9692.82 |
| hypothetical protein | OCA5_RS18635 | Not Available | - | 552888 - 553175 | 10437.8 |
| nrsf family protein | OCA5_RS02650 | Not Available | - | 553458 - 554099 | 22731.6 |
| sigma-70 family rna polymerase sigma factor | OCA5_RS02655 | Not Available | - | 554096 - 554650 | 20582.6 |
| gdccvxc domain-containing (seleno)protein | OCA5_RS19440 | Not Available | + | 556068 - 556319 | 8517.44 |
| lysr substrate-binding domain-containing protein | OCA5_RS02665 | Not Available | + | 556335 - 557807 | 52936.2 |
| conjugal transfer protein trag | OCA5_RS02670 | Not Available | + | 558044 - 560035 | 73417.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.