Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l28 | OCA5_RS02235 | Not Available | - | 464181 - 464474 | 10580.0 |
| duf3108 domain-containing protein | OCA5_RS02240 | Not Available | + | 464694 - 465617 | 31943.8 |
| helicase-related protein | OCA5_RS02245 | Not Available | + | 465868 - 469182 | 119794.0 |
| rna-binding s4 domain-containing protein | OCA5_RS02250 | Not Available | + | 469186 - 469455 | 10088.1 |
| ferredoxin fdxa | OCA5_RS02255 | Not Available | + | 469548 - 469886 | 12580.6 |
| card family transcriptional regulator | OCA5_RS18610 | Not Available | + | 470111 - 471082 | 34387.1 |
| m48 family metalloprotease | OCA5_RS02265 | Not Available | - | 471210 - 472697 | 53763.9 |
| thermonuclease family protein | OCA5_RS02270 | Not Available | - | 472701 - 473495 | 28598.3 |
| glsb/yeaq/ymge family stress response membrane protein | OCA5_RS02275 | Not Available | - | 473519 - 473788 | 9262.51 |
| yidb family protein | OCA5_RS02280 | Not Available | - | 473824 - 474420 | 19597.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.