Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 8-oxo-dgtp diphosphatase mutt | OCA5_RS02135 | Not Available | - | 440831 - 441232 | 14874.2 |
| bifunctional glutamate n-acetyltransferase/amino-acid acetyltransferase argj | OCA5_RS02140 | Not Available | - | 441384 - 442637 | 43280.2 |
| peptidylprolyl isomerase | OCA5_RS02145 | Not Available | - | 442914 - 443819 | 32698.1 |
| preprotein translocase subunit seca | OCA5_RS02150 | Not Available | + | 444186 - 447011 | 105915.0 |
| hypothetical protein | OCA5_RS02155 | Not Available | - | 447089 - 447499 | 15069.9 |
| murein l,d-transpeptidase family protein | OCA5_RS02160 | Not Available | - | 447969 - 449420 | 51883.4 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | OCA5_RS02165 | Not Available | - | 449611 - 450573 | 34658.4 |
| site-specific tyrosine recombinase xerd | OCA5_RS02170 | Not Available | - | 450691 - 451641 | 35134.3 |
| hypothetical protein | OCA5_RS02175 | Not Available | - | 451661 - 451807 | 5331.63 |
| shikimate kinase | OCA5_RS02180 | Not Available | + | 451966 - 452583 | 22260.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.