Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aliphatic sulfonate abc transporter substrate-binding protein | OCA5_RS01935 | Not Available | + | 400433 - 401401 | 34856.1 |
| abc transporter permease | OCA5_RS01940 | Not Available | + | 401545 - 402390 | 30155.9 |
| abc transporter atp-binding protein | OCA5_RS01945 | Not Available | + | 402394 - 403176 | 28249.2 |
| osmc family protein | OCA5_RS01950 | Not Available | + | 403229 - 403741 | 18129.9 |
| hypothetical protein | OCA5_RS01955 | Not Available | + | 403755 - 404549 | 28034.4 |
| dna mismatch repair protein muts | OCA5_RS01960 | Not Available | - | 404647 - 407385 | 98268.5 |
| patatin-like phospholipase family protein | OCA5_RS01965 | Not Available | - | 407471 - 408577 | 40313.9 |
| fur family transcriptional regulator | OCA5_RS01970 | Not Available | + | 408779 - 409267 | 17472.3 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | OCA5_RS01975 | Not Available | + | 409456 - 410763 | 46473.0 |
| na+/h+ antiporter | OCA5_RS01980 | Not Available | - | 410879 - 412486 | 58957.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.