Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mmcb family dna repair protein | OCA5_RS01890 | Not Available | + | 388935 - 389423 | 17699.3 |
| biliverdin-producing heme oxygenase | OCA5_RS01895 | Not Available | - | 389424 - 389981 | 20305.4 |
| hypothetical protein | OCA5_RS01900 | Not Available | - | 389999 - 390232 | 8683.6 |
| actr/prra/rega family redox response regulator transcription factor | OCA5_RS01905 | Not Available | - | 390363 - 390935 | 20632.8 |
| acts/prrb/regb family redox-sensitive histidine kinase | OCA5_RS01910 | Not Available | - | 391053 - 392384 | 47706.5 |
| polyhydroxyalkanoate depolymerase | OCA5_RS01915 | Not Available | + | 392535 - 393863 | 49659.7 |
| hypothetical protein | OCA5_RS19415 | Not Available | - | 393929 - 394333 | 14891.8 |
| m48 family metallopeptidase | OCA5_RS01920 | Not Available | + | 394262 - 394957 | 26378.0 |
| transglycosylase domain-containing protein | OCA5_RS01925 | Not Available | - | 395023 - 397284 | 81057.7 |
| [protein-pii] uridylyltransferase | OCA5_RS01930 | Not Available | - | 397430 - 400249 | 106071.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.