Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| porin | OCA5_RS01730 | Not Available | - | 353109 - 354290 | 41483.9 |
| 2-keto-4-pentenoate hydratase | OCA5_RS01735 | Not Available | + | 354574 - 355350 | 27554.1 |
| hypothetical protein | OCA5_RS01740 | Not Available | - | 355369 - 355641 | 10086.3 |
| iron abc transporter permease | OCA5_RS01750 | Not Available | - | 356326 - 357086 | 28188.3 |
| hsp20/alpha crystallin family protein | OCA5_RS01755 | Not Available | - | 357158 - 357667 | 19140.6 |
| hsp20 family protein | OCA5_RS01760 | Not Available | - | 357764 - 358240 | 17597.0 |
| higa family addiction module antitoxin | OCA5_RS01765 | Not Available | + | 358745 - 359083 | 12139.7 |
| class i sam-dependent dna methyltransferase | OCA5_RS01770 | Not Available | + | 359400 - 360869 | 53277.3 |
| bsubi/psti family type ii restriction endonuclease | OCA5_RS01775 | Not Available | + | 360866 - 361930 | 38354.8 |
| atp-dependent nuclease | OCA5_RS01780 | Not Available | + | 362236 - 364083 | 67800.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.