Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative entry exclusion protein trbk-alt | OCA5_RS01635 | Not Available | + | 334851 - 335135 | 10338.7 |
| p-type conjugative transfer protein trbl | OCA5_RS01640 | Not Available | + | 335139 - 336503 | 44927.4 |
| conjugal transfer protein trbf | OCA5_RS01645 | Not Available | + | 336500 - 337189 | 25763.6 |
| p-type conjugative transfer protein trbg | OCA5_RS01650 | Not Available | + | 337186 - 338169 | 35439.2 |
| trbi/virb10 family protein | OCA5_RS01655 | Not Available | + | 338166 - 339350 | 41806.9 |
| duf2274 domain-containing protein | OCA5_RS01660 | Not Available | + | 339352 - 339591 | 8681.56 |
| lysr family transcriptional regulator | OCA5_RS01665 | Not Available | - | 339524 - 340507 | 36526.7 |
| iron abc transporter permease | OCA5_RS01670 | Not Available | - | 340797 - 341125 | 11929.4 |
| pts sugar transporter subunit iia | OCA5_RS01675 | Not Available | - | 341135 - 341587 | 15985.7 |
| response regulator transcription factor | OCA5_RS01680 | Not Available | - | 341635 - 342330 | 26077.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.