Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf736 domain-containing protein | OCA5_RS01585 | Not Available | + | 324111 - 324443 | 12079.0 |
| lytic transglycosylase domain-containing protein | OCA5_RS01590 | Not Available | + | 324448 - 325170 | 25173.9 |
| relaxase/mobilization nuclease domain-containing protein | OCA5_RS01595 | Not Available | + | 325414 - 327153 | 64098.0 |
| conjugal transfer protein trag | OCA5_RS01600 | Not Available | + | 327302 - 329287 | 73581.1 |
| copg family transcriptional regulator | OCA5_RS01605 | Not Available | + | 329292 - 329717 | 15597.8 |
| p-type conjugative transfer atpase trbb | OCA5_RS01610 | Not Available | + | 330013 - 330993 | 34363.4 |
| trbc/virb2 family protein | OCA5_RS01615 | Not Available | + | 330990 - 331322 | 11384.0 |
| virb3 family type iv secretion system protein | OCA5_RS01620 | Not Available | + | 331322 - 331603 | 9908.41 |
| conjugal transfer protein trbe | OCA5_RS01625 | Not Available | + | 331617 - 334070 | 89533.6 |
| p-type conjugative transfer protein trbj | OCA5_RS01630 | Not Available | + | 334073 - 334840 | 27642.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.