Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | OCA5_RS01290 | Not Available | - | 272217 - 272951 | 26675.2 |
| signal recognition particle-docking protein ftsy | OCA5_RS01295 | Not Available | + | 273036 - 273992 | 33512.5 |
| septation protein a | OCA5_RS01300 | Not Available | + | 274058 - 274660 | 22443.1 |
| marr family winged helix-turn-helix transcriptional regulator | OCA5_RS01305 | Not Available | - | 274669 - 275115 | 16671.6 |
| pas domain-containing protein | OCA5_RS01310 | Not Available | + | 275909 - 276352 | 16124.2 |
| rna polymerase sigma factor | OCA5_RS01315 | Not Available | + | 276499 - 277209 | 26935.4 |
| gtp cyclohydrolase i fole | OCA5_RS01320 | Not Available | + | 277274 - 277906 | 23768.5 |
| fad-dependent oxidoreductase | OCA5_RS01325 | Not Available | + | 277934 - 279457 | 54714.4 |
| duf4142 domain-containing protein | OCA5_RS01330 | Not Available | + | 279693 - 280214 | 18550.3 |
| cupredoxin family copper-binding protein | OCA5_RS01335 | Not Available | + | 280247 - 280564 | 11627.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.