Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc, c subunit domain protein | OCAR_7056 | Q9HN31 | - | 3012395 - 3012691 | 11030.2 |
| conserved hypothetical protein | OCAR_7057 | Not Available | - | 3012691 - 3013011 | 11429.2 |
| conserved hypothetical protein | OCAR_7058 | Not Available | + | 3013344 - 3013586 | 9034.26 |
| carboxymethylenebutenolidase | OCAR_7059 | P71505 | - | 3013844 - 3014758 | 32560.0 |
| hypothetical protein | OCAR_7060 | Not Available | - | 3014908 - 3015072 | 5436.23 |
| 4-alpha-glucanotransferase | OCAR_7061 | P15977 | - | 3015158 - 3016933 | 64731.3 |
| hypothetical protein | OCAR_7062 | Not Available | + | 3017003 - 3017116 | 3846.61 |
| alpha amylase family protein | OCAR_7063 | Q2RTZ1 | + | 3017283 - 3019229 | 73243.7 |
| 1,4-alpha-glucan branching enzyme | OCAR_7065 | Q133N2 | + | 3022522 - 3024669 | 81065.5 |
| glycogen debranching enzyme glgx | OCAR_7066 | P0A4Y5 | + | 3024669 - 3026750 | 77808.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.