Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | OCA5_RS01240 | Not Available | + | 263323 - 263733 | 14486.3 |
| 50s ribosomal protein l19 | OCA5_RS01245 | Not Available | - | 263803 - 264198 | 14617.6 |
| trna (guanosine(37)-n1)-methyltransferase trmd | OCA5_RS01250 | Not Available | - | 264302 - 265102 | 28496.9 |
| ribosome maturation factor rimm | OCA5_RS01255 | Not Available | - | 265199 - 265723 | 18494.9 |
| 30s ribosomal protein s16 | OCA5_RS01260 | Not Available | - | 265731 - 266063 | 12309.1 |
| signal recognition particle protein | OCA5_RS01265 | Not Available | - | 266199 - 267746 | 54432.2 |
| simpl domain-containing protein | OCA5_RS01270 | Not Available | - | 268195 - 268890 | 23834.3 |
| gyri-like domain-containing protein | OCA5_RS19405 | Not Available | - | 268901 - 269725 | 28418.8 |
| diaminopimelate epimerase | OCA5_RS01280 | Not Available | + | 269863 - 270735 | 31497.5 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | OCA5_RS01285 | Not Available | + | 270737 - 271999 | 46060.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.