Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| prc-barrel domain protein | OCAR_6906 | Not Available | - | 2868479 - 2868829 | 12476.9 |
| conserved hypothetical protein | OCAR_6907 | Not Available | - | 2869026 - 2869235 | 7652.37 |
| curved dna-binding protein | OCAR_6908 | A5W9N6 | - | 2869319 - 2870308 | 34200.5 |
| conserved hypothetical protein | OCAR_6909 | Q84I68 | - | 2870411 - 2870878 | 16316.4 |
| pyridoxamine 5'-phosphate oxidase | OCAR_6910 | Q1QQ51 | + | 2870954 - 2871589 | 23534.7 |
| short-chain dehydrogenase/reductase sdr | OCAR_6911 | P05406 | + | 2871635 - 2872393 | 27044.2 |
| atp dependent dna ligase | OCAR_6912 | Q9I1X7 | + | 2872611 - 2875280 | 98235.9 |
| cuta1 divalent ion tolerance protein | OCAR_6913 | Q7SIA8 | - | 2875448 - 2875765 | 11669.2 |
| mg2+ transporter protein, cora family protein | OCAR_6914 | Q57HQ5 | - | 2875797 - 2876774 | 36128.2 |
| erfk/ybis/ycfs/ynhg | OCAR_6915 | P39176 | + | 2877033 - 2877755 | 26271.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.