Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | OCAR_6886 | Not Available | + | 2846487 - 2846606 | 4087.61 |
| glutamine amidotransferase class-i | OCAR_6887 | P40194 | + | 2846693 - 2847418 | 26430.8 |
| diguanylate cyclase/phosphodiesterase | OCAR_6888 | P55552 | - | 2847434 - 2850157 | 100963.0 |
| methylmalonate-semialdehyde dehydrogenase | OCAR_6889 | Q9I702 | - | 2850340 - 2851839 | 53940.8 |
| transcriptional regulator, lysr family | OCAR_6890 | P72131 | + | 2852010 - 2852843 | 31485.1 |
| acyl-coa dehydrogenase | OCAR_6891 | Q5LLW7 | + | 2852946 - 2854739 | 62575.3 |
| enoyl-coa hydratase/isomerase | OCAR_6892 | Q5XIC0 | + | 2854889 - 2855641 | 26976.9 |
| histone deacetylase superfamily | OCAR_6893 | P72702 | + | 2855689 - 2856621 | 33919.3 |
| exodeoxyribonuclease vii, small subunit | OCAR_6894 | B6JFI3 | + | 2856694 - 2856945 | 9220.88 |
| 1-deoxy-d-xylulose-5-phosphate synthase | OCAR_6895 | Q89RW1 | + | 2857164 - 2859074 | 67670.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.