Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| b12-dependent ribonucleoside diphosphate reductase | OCAR_6765 | Q89MB9 | - | 2721142 - 2724897 | 137297.0 |
| ggdef-domain containing protein | OCAR_6766 | Q9HT84 | + | 2725622 - 2726839 | 44014.8 |
| formate dehydrogenase, beta subunit | OCAR_6767 | P0AAJ6 | - | 2726894 - 2727829 | 34129.8 |
| formate dehydrogenase, alpha subunit | OCAR_6768 | P32176 | - | 2727841 - 2730309 | 92085.5 |
| formate dehydrogenase-o, major subunit | OCAR_6769 | P32176 | - | 2730322 - 2730921 | 21755.2 |
| conserved hypothetical protein | OCAR_6770 | Not Available | + | 2731370 - 2731618 | 8347.31 |
| polyamine abc transporter | OCAR_6771 | P0AFL2 | - | 2731990 - 2732787 | 28533.6 |
| abc transporter | OCAR_6772 | P45170 | - | 2732784 - 2733662 | 31243.2 |
| putrescine transport atp-binding protein potg | OCAR_6773 | Q1AS06 | - | 2733659 - 2734765 | 40147.3 |
| abc transporter substrate-binding protein | OCAR_6774 | P0AFK9 | - | 2734765 - 2735853 | 38931.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.