Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hopanoid biosynthesis associated rnd transporter like protein hpnn | OCAR_6664 | B3QHB6 | - | 2601470 - 2604070 | 93416.0 |
| 1-deoxy-d-xylulose-5-phosphate synthase | OCAR_6666 | Q2IRL7 | + | 2604283 - 2606199 | 68243.9 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | OCAR_6667 | Q6N3G0 | + | 2606192 - 2607160 | 34662.6 |
| hopanoid biosynthesis associated radical sam protein hpnh | OCAR_6668 | Q92CY2 | + | 2607179 - 2608381 | 44389.5 |
| conserved hypothetical protein | OCAR_6669 | Not Available | - | 2608469 - 2609005 | 20385.7 |
| hopanoid-associated phosphorylase | OCAR_6670 | Not Available | - | 2609303 - 2610028 | 25309.8 |
| squalene-hopene cyclase | OCAR_6671 | P54924 | - | 2610025 - 2611989 | 73343.4 |
| squalene-associated fad-dependent desaturase | OCAR_6672 | P55349 | - | 2612000 - 2613265 | 45304.7 |
| squalene synthase hpnd | OCAR_6673 | Q6N3F2 | - | 2613265 - 2614092 | 30729.2 |
| squalene synthase hpnc | OCAR_6674 | Q6N3F1 | - | 2614100 - 2614978 | 32365.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.