Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | OCA5_RS00995 | Not Available | - | 214679 - 215656 | 33132.2 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | OCA5_RS01000 | Not Available | - | 215711 - 216784 | 37837.7 |
| uroporphyrinogen-iii synthase | OCA5_RS01005 | Not Available | + | 216941 - 217705 | 26862.4 |
| cog4223 family protein | OCA5_RS01010 | Not Available | + | 217722 - 219005 | 43911.1 |
| heme biosynthesis protein hemy | OCA5_RS01015 | Not Available | + | 219036 - 220754 | 61725.7 |
| Trna-thr | Not Available | Not Available | + | 220840 - 220915 | Not Available |
| ggdef domain-containing protein | OCA5_RS01025 | Not Available | - | 221125 - 222171 | 38794.9 |
| lysr family transcriptional regulator | OCA5_RS01030 | Not Available | + | 222402 - 223337 | 34277.5 |
| hlyd family secretion protein | OCA5_RS01035 | Not Available | - | 223513 - 224412 | 32516.0 |
| duf1656 domain-containing protein | OCA5_RS01040 | Not Available | - | 224427 - 224624 | 7461.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.