Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| secretion protein hlyd | OCAR_6438 | P13510 | - | 2381298 - 2382266 | 34781.5 |
| outer membrane efflux protein | OCAR_6439 | P13509 | - | 2382263 - 2383537 | 45759.7 |
| helix-turn-helix protein, copg | OCAR_6440 | Not Available | - | 2384155 - 2384634 | 17853.1 |
| trag family protein | OCAR_6441 | Q00184 | - | 2384638 - 2386653 | 73845.6 |
| tena/thi-4 family | OCAR_6442 | P44659 | - | 2386811 - 2387473 | 24315.8 |
| type iv secretory pathway vird2 components | OCAR_6443 | Not Available | - | 2387545 - 2389281 | 64103.0 |
| lytic transglycosylase, catalytic | OCAR_6444 | O31608 | - | 2389520 - 2390281 | 26887.5 |
| hypothetical protein | OCAR_6445 | Not Available | + | 2390294 - 2390434 | 4861.9 |
| hypothetical protein | OCAR_6446 | Not Available | - | 2390460 - 2390699 | 9144.87 |
| protein of unknown function | OCAR_6447 | P55425 | - | 2390738 - 2391067 | 12066.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.