Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| conjugal transfer protein | OCAR_6428 | Not Available | - | 2370209 - 2370472 | 9426.59 |
| conjugal transfer protein trbc | OCAR_6429 | P55396 | - | 2370472 - 2370807 | 11614.5 |
| p-type conjugative transfer atpase trbb | OCAR_6430 | P54907 | - | 2370804 - 2371802 | 35228.6 |
| transcriptional regulator, lysr family | OCAR_6431 | Q04778 | - | 2371993 - 2372973 | 35741.1 |
| zinc transporter zitb | OCAR_6432 | P13512 | - | 2372945 - 2373844 | 32094.7 |
| putative membrane protein of unknown function | OCAR_6433 | Not Available | - | 2373848 - 2374684 | 30917.4 |
| conserved hypothetical protein | OCAR_6434 | Not Available | - | 2374681 - 2375169 | 18129.8 |
| type iv pilus assembly pilz | OCAR_6435 | Not Available | - | 2375229 - 2375369 | 5324.55 |
| cadmium-translocating p-type atpase | OCAR_6436 | Q3YW59 | - | 2375540 - 2377732 | 75779.6 |
| cation efflux system protein czca | OCAR_6437 | Q48815 | - | 2377719 - 2380949 | 116167.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.