Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyltransferase | OCA5_RS00945 | Not Available | - | 201876 - 203594 | 60262.4 |
| mfs transporter | OCA5_RS00950 | Not Available | + | 203715 - 205130 | 49626.8 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | OCA5_RS00955 | Not Available | - | 205268 - 206860 | 55646.6 |
| heparinase ii/iii family protein | OCA5_RS00960 | Not Available | - | 207017 - 208762 | 64041.0 |
| rsmb/nop family class i sam-dependent rna methyltransferase | OCA5_RS00965 | Not Available | - | 208877 - 210217 | 48181.2 |
| duf1674 domain-containing protein | OCA5_RS00970 | Not Available | + | 210397 - 210609 | 7459.6 |
| thermonuclease family protein | OCA5_RS00975 | Not Available | + | 210678 - 211241 | 20547.5 |
| l,d-transpeptidase | OCA5_RS00980 | Not Available | - | 211278 - 211802 | 18578.3 |
| acetate--coa ligase | OCA5_RS00985 | Not Available | - | 212084 - 214039 | 72133.7 |
| eve domain-containing protein | OCA5_RS00990 | Not Available | - | 214257 - 214670 | 15339.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.