Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| yggs family pyridoxal phosphate-dependent enzyme | OCA5_RS00845 | Not Available | + | 183842 - 184531 | 24566.4 |
| l,d-transpeptidase | OCA5_RS00850 | Not Available | - | 184629 - 185198 | 21328.9 |
| response regulator transcription factor | OCA5_RS00855 | Not Available | + | 185320 - 186006 | 25095.9 |
| cyclic nucleotide-binding domain-containing protein | OCA5_RS00860 | Not Available | + | 186073 - 186513 | 15657.9 |
| exodeoxyribonuclease iii | OCA5_RS00865 | Not Available | - | 186702 - 187517 | 30878.1 |
| outer membrane lipoprotein carrier protein lola | OCA5_RS00870 | Not Available | - | 187599 - 188429 | 29486.1 |
| dna translocase ftsk | OCA5_RS00875 | Not Available | - | 188572 - 191028 | 88877.5 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | OCA5_RS00880 | Not Available | - | 191037 - 192269 | 44271.7 |
| ammonium transporter | OCA5_RS00885 | Not Available | - | 192538 - 193854 | 45130.7 |
| p-ii family nitrogen regulator | OCA5_RS00890 | Not Available | - | 193896 - 194234 | 12097.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.