Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | OCA5_RS00795 | Not Available | + | 169648 - 170976 | 47090.1 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | OCA5_RS00800 | Not Available | + | 171127 - 173001 | 67598.7 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | OCA5_RS00805 | Not Available | + | 173153 - 173842 | 24278.3 |
| para family protein | OCA5_RS00810 | Not Available | + | 173839 - 174690 | 30742.0 |
| parb/repb/spo0j family partition protein | OCA5_RS00815 | Not Available | + | 174864 - 175775 | 32639.9 |
| glycosyltransferase family 39 protein | OCA5_RS00820 | Not Available | - | 175837 - 177555 | 62805.6 |
| dna polymerase iii subunit delta | OCA5_RS00825 | Not Available | - | 177672 - 178700 | 36463.9 |
| lps assembly lipoprotein lpte | OCA5_RS00830 | Not Available | - | 178719 - 179273 | 20228.2 |
| leucine--trna ligase | OCA5_RS00835 | Not Available | - | 179260 - 181899 | 98029.7 |
| diguanylate cyclase domain-containing protein | OCA5_RS00840 | Not Available | - | 182015 - 183709 | 61090.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.