Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcription termination factor rho | OCA5_RS00745 | Not Available | + | 159238 - 160503 | 47101.9 |
| helix-turn-helix domain-containing protein | OCA5_RS00750 | Not Available | - | 160579 - 161184 | 22415.0 |
| glutathione s-transferase | OCA5_RS00755 | Not Available | - | 161221 - 161871 | 24442.3 |
| 2-hydroxyacid dehydrogenase | OCA5_RS00760 | Not Available | - | 161910 - 162857 | 34482.4 |
| cupin domain-containing protein | OCA5_RS00765 | Not Available | - | 162854 - 163462 | 22790.9 |
| tartrate dehydrogenase | OCA5_RS00770 | Not Available | + | 163554 - 164630 | 38781.6 |
| abc transporter substrate-binding protein | OCA5_RS00775 | Not Available | + | 164855 - 165721 | 31496.7 |
| abc transporter atp-binding protein | OCA5_RS00780 | Not Available | + | 165729 - 166532 | 29509.3 |
| abc transporter permease | OCA5_RS00785 | Not Available | + | 166532 - 167410 | 31781.2 |
| thioredoxin domain-containing protein | OCA5_RS00790 | Not Available | - | 167491 - 169545 | 75098.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.