Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pas domain-containing hybrid sensor histidine kinase/response regulator | OCA5_RS00645 | Not Available | + | 141201 - 143423 | 80716.2 |
| gnat family n-acetyltransferase | OCA5_RS00650 | Not Available | + | 143545 - 144504 | 35686.0 |
| type i pantothenate kinase | OCA5_RS00655 | Not Available | - | 144694 - 145650 | 36637.1 |
| phosphoribosyl-atp diphosphatase | OCA5_RS00660 | Not Available | - | 145721 - 146050 | 11837.3 |
| imidazole glycerol phosphate synthase subunit hisf | OCA5_RS00665 | Not Available | - | 146131 - 146904 | 27366.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | OCA5_RS00670 | Not Available | - | 146904 - 147641 | 25683.1 |
| imidazole glycerol phosphate synthase subunit hish | OCA5_RS00675 | Not Available | - | 147638 - 148288 | 23723.7 |
| duf2628 domain-containing protein | OCA5_RS00680 | Not Available | - | 148285 - 148782 | 18116.4 |
| imidazoleglycerol-phosphate dehydratase hisb | OCA5_RS00685 | Not Available | - | 148811 - 149404 | 21198.3 |
| atp-dependent protease subunit hslv | OCA5_RS00690 | Not Available | + | 149599 - 150150 | 19669.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.