Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase | OCA5_RS00545 | Not Available | - | 121330 - 121953 | 23061.7 |
| 4-hydroxy-tetrahydrodipicolinate reductase | OCA5_RS00550 | Not Available | - | 121975 - 122793 | 28061.7 |
| orotidine-5'-phosphate decarboxylase | OCA5_RS00555 | Not Available | - | 122904 - 123611 | 24136.2 |
| nadph-dependent fmn reductase | OCA5_RS00560 | Not Available | - | 123621 - 124190 | 20474.0 |
| class i sam-dependent methyltransferase | OCA5_RS00565 | Not Available | - | 124294 - 124890 | 22009.3 |
| molecular chaperone dnaj | OCA5_RS00570 | Not Available | - | 124987 - 126120 | 40019.5 |
| molecular chaperone dnak | OCA5_RS00575 | Not Available | - | 126274 - 128187 | 68509.4 |
| hypothetical protein | OCA5_RS00580 | Not Available | + | 128498 - 129466 | 34389.2 |
| nucleotide exchange factor grpe | OCA5_RS00585 | Not Available | - | 129504 - 130106 | 21556.5 |
| heat-inducible transcriptional repressor hrca | OCA5_RS00590 | Not Available | - | 130221 - 131312 | 39432.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.