Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hsp20 family protein | OCA5_RS00350 | Not Available | + | 77576 - 78001 | 16032.2 |
| duf1150 family protein | OCA5_RS00355 | Not Available | + | 78049 - 78312 | 9273.03 |
| dihydroxy-acid dehydratase | OCA5_RS00360 | Not Available | + | 78768 - 80609 | 65648.9 |
| pts iia-like nitrogen regulatory protein ptsn | OCA5_RS00365 | Not Available | - | 80788 - 81249 | 16378.1 |
| ribosome hibernation-promoting factor, hpf/yfia family | OCA5_RS00370 | Not Available | - | 81413 - 82021 | 22114.0 |
| rna polymerase factor sigma-54 | OCA5_RS00375 | Not Available | - | 82078 - 83727 | 60127.4 |
| lps export abc transporter atp-binding protein | OCA5_RS00380 | Not Available | - | 83839 - 84969 | 42023.3 |
| lpta/osta family protein | OCA5_RS00385 | Not Available | - | 85104 - 85877 | 26256.6 |
| lps export abc transporter periplasmic protein lptc | OCA5_RS00390 | Not Available | - | 85909 - 86604 | 24833.7 |
| ribonuclease d | OCA5_RS00395 | Not Available | - | 86731 - 87345 | 22991.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.