Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| lapa family protein | OCA5_RS00295 | Not Available | - | 69042 - 69413 | 13408.6 |
| integration host factor subunit beta | OCA5_RS00300 | Not Available | - | 69504 - 69824 | 11833.2 |
| signal peptide peptidase sppa | OCA5_RS00305 | Not Available | - | 69984 - 70964 | 34892.4 |
| 30s ribosomal protein s1 | OCA5_RS00310 | Not Available | - | 71400 - 73100 | 62771.0 |
| (d)cmp kinase | OCA5_RS00320 | Not Available | - | 73674 - 74303 | 22057.5 |
| aaa family atpase | OCA5_RS00325 | Not Available | - | 74300 - 74935 | 23030.9 |
| hypothetical protein | OCA5_RS00330 | Not Available | - | 74919 - 75155 | 8508.47 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | OCA5_RS00335 | Not Available | - | 75230 - 76561 | 46194.9 |
| tigr02300 family protein | OCA5_RS00340 | Not Available | + | 76712 - 77128 | 14882.5 |
| Trna-ala | Not Available | Not Available | + | 77254 - 77329 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.