Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sh3 domain-containing protein | OCA5_RS00195 | Not Available | - | 42812 - 43282 | 17347.4 |
| 2-hydroxyacid dehydrogenase | OCA5_RS00200 | Not Available | + | 43598 - 44599 | 36531.7 |
| hesa/moeb/thif family protein | OCA5_RS00205 | Not Available | - | 44621 - 45421 | 28135.8 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | OCA5_RS00210 | Not Available | - | 45434 - 46318 | 32187.7 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | OCA5_RS00215 | Not Available | + | 46395 - 47159 | 28151.5 |
| 2-polyprenylphenol 6-hydroxylase | OCA5_RS00220 | Not Available | + | 47156 - 48730 | 57786.1 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | OCA5_RS00225 | Not Available | + | 48790 - 50214 | 49573.8 |
| dutp diphosphatase | OCA5_RS00230 | Not Available | + | 50211 - 50669 | 15850.3 |
| sensor histidine kinase | OCA5_RS00235 | Not Available | + | 50799 - 53303 | 91538.9 |
| bifunctional trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae/phosphotransferase | OCA5_RS00240 | Not Available | + | 53300 - 54829 | 55858.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.