Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | OCA5_RS00145 | Not Available | + | 31795 - 32874 | 38483.7 |
| 30s ribosomal protein s15 | OCA5_RS00150 | Not Available | + | 32887 - 33156 | 10225.4 |
| polyribonucleotide nucleotidyltransferase | OCA5_RS00155 | Not Available | + | 33446 - 35590 | 77478.5 |
| superoxide dismutase | OCA5_RS00160 | Not Available | + | 35742 - 36470 | 26483.7 |
| hydrogen peroxide-inducible genes activator | OCA5_RS00165 | Not Available | - | 36542 - 37444 | 32904.0 |
| catalase | OCA5_RS00170 | Not Available | + | 37560 - 39053 | 55530.2 |
| enoyl-acp reductase fabi | OCA5_RS00175 | Not Available | - | 39164 - 39985 | 28781.5 |
| beta-ketoacyl-acp synthase i | OCA5_RS00180 | Not Available | - | 40138 - 41361 | 43104.3 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase faba | OCA5_RS00185 | Not Available | - | 41454 - 41984 | 19468.7 |
| iron response transcriptional regulator irra | OCA5_RS00190 | Not Available | + | 42196 - 42708 | 19311.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.