Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Portal protein | OCA5_RS12170 | Not Available | - | 2594469 - 2596082 | 59681.5 |
| Putative phage terminase large subunit | OCA5_RS12175 | Not Available | - | 2596088 - 2598037 | 72614.6 |
| hypothetical protein | OCA5_RS19160 | Not Available | - | 2597937 - 2598500 | 20010.2 |
| Putative minor tail protein | OCA5_RS12185 | Not Available | - | 2598737 - 2599270 | 19466.8 |
| Hypothetical protein | OCA5_RS15565 | Not Available | - | 3301456 - 3301962 | 18052.9 |
| Putative endolysin/secretion activator protein | OCA5_RS15570 | Not Available | - | 3301955 - 3302689 | 26676.8 |
| Hypothetical protein | OCA5_RS15575 | Not Available | - | 3302780 - 3303070 | 10359.7 |
| Ribonuclease iii | OCA5_RS15580 | Not Available | - | 3303088 - 3304158 | 38159.6 |
| Tail protein | OCA5_RS15585 | Not Available | - | 3304187 - 3308014 | 139405.0 |
| Gene transfer agent host specificity protein | OCA5_RS15590 | Not Available | - | 3308018 - 3308650 | 22029.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.