Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| p-type conjugative transfer protein trbj | OCA5_RS17675 | Not Available | - | 127277 - 128080 | 29339.8 |
| conjugal transfer protein trbe | OCA5_RS17680 | Not Available | - | 128055 - 130493 | 91060.7 |
| conjugal transfer protein trbd | OCA5_RS17685 | Not Available | - | 130502 - 130801 | 11357.4 |
| trbc/virb2 family protein | OCA5_RS17690 | Not Available | - | 130794 - 131159 | 12060.8 |
| p-type conjugative transfer atpase trbb | OCA5_RS17695 | Not Available | - | 131149 - 132114 | 34823.0 |
| acyl-homoserine-lactone synthase trai | OCA5_RS17700 | Not Available | - | 132126 - 132752 | 22747.6 |
| Portal protein | OCA5_RS07340 | Not Available | + | 1577389 - 1578564 | 42919.1 |
| hypothetical protein | OCA5_RS07345 | Not Available | + | 1578698 - 1578898 | 7629.41 |
| hypothetical protein | OCA5_RS07350 | Not Available | + | 1578895 - 1579095 | 7463.28 |
| Putative prohead protease | OCA5_RS07355 | Not Available | + | 1579309 - 1579824 | 19188.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.