Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | OCA5_RS03955 | Not Available | + | 832908 - 833168 | 9005.65 |
| dsba family protein | OCA5_RS03960 | Not Available | + | 833213 - 833938 | 25827.3 |
| duf1013 domain-containing protein | OCA5_RS03965 | Not Available | - | 834158 - 834859 | 25905.9 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | OCA5_RS03970 | Not Available | + | 835158 - 836159 | 36175.5 |
| homoserine kinase | OCA5_RS03975 | Not Available | + | 836294 - 837274 | 35466.7 |
| ribonuclease hi | OCA5_RS03980 | Not Available | + | 837271 - 837720 | 16749.8 |
| peroxiredoxin | OCA5_RS03985 | Not Available | - | 837870 - 838355 | 17244.8 |
| protein-disulfide reductase dsbd domain-containing protein | OCA5_RS03990 | Not Available | - | 838420 - 839259 | 29938.7 |
| yqge/algh family protein | OCA5_RS03995 | Not Available | + | 839383 - 840015 | 22402.9 |
| eal domain-containing protein | OCA5_RS04000 | Not Available | - | 840174 - 843128 | 107949.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.