Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | OCA5_RS03805 | Not Available | - | 801613 - 802587 | 34993.0 |
| gntr family transcriptional regulator | OCA5_RS03810 | Not Available | - | 803017 - 803727 | 26367.5 |
| abc transporter substrate-binding protein | OCA5_RS03815 | Not Available | + | 803999 - 804952 | 33754.3 |
| abc transporter atp-binding protein | OCA5_RS03820 | Not Available | + | 805081 - 805857 | 28927.7 |
| abc transporter permease | OCA5_RS03825 | Not Available | + | 805873 - 806691 | 29558.0 |
| putative hydro-lyase | OCA5_RS03830 | Not Available | + | 806715 - 807530 | 29960.6 |
| gamma-glutamyltransferase | OCA5_RS03835 | Not Available | + | 807532 - 809151 | 58052.7 |
| diaminopropionate ammonia-lyase | OCA5_RS03840 | Not Available | + | 809202 - 810422 | 43105.2 |
| m20 family metallopeptidase | OCA5_RS03845 | Not Available | + | 810428 - 811642 | 42887.4 |
| 3-oxoadipate--succinyl-coa transferase subunit b | OCA5_RS03850 | Not Available | - | 811871 - 812644 | 27545.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.