Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sulfate abc transporter substrate-binding protein | OCA5_RS03705 | Not Available | + | 779458 - 780447 | 36326.1 |
| sulfate abc transporter permease subunit cyst | OCA5_RS03710 | Not Available | + | 780523 - 781359 | 29932.5 |
| sulfate abc transporter permease subunit cysw | OCA5_RS03715 | Not Available | + | 781368 - 782246 | 31446.3 |
| sulfate/molybdate abc transporter atp-binding protein | OCA5_RS03720 | Not Available | + | 782236 - 783282 | 38477.3 |
| cap domain-containing protein | OCA5_RS03725 | Not Available | + | 783553 - 784056 | 17658.1 |
| 3-hydroxybutyrate dehydrogenase | OCA5_RS03730 | Not Available | + | 784154 - 784942 | 27683.4 |
| lipopolysaccharide biosynthesis protein | OCA5_RS03735 | Not Available | - | 785124 - 786500 | 49836.9 |
| duf924 family protein | OCA5_RS03740 | Not Available | - | 786601 - 787155 | 20425.0 |
| long-chain-fatty-acid--coa ligase | OCA5_RS03745 | Not Available | - | 787152 - 788834 | 61105.0 |
| d-alanyl-d-alanine carboxypeptidase family protein | OCA5_RS03750 | Not Available | - | 789119 - 790597 | 51840.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.