Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-1 | OCA5_RS03615 | Not Available | - | 760083 - 760364 | 10677.0 |
| dead/deah box helicase | OCA5_RS03620 | Not Available | - | 760383 - 761921 | 55639.6 |
| hwe histidine kinase domain-containing protein | OCA5_RS03625 | Not Available | + | 762824 - 764464 | 59599.4 |
| sigma-70 family rna polymerase sigma factor | OCA5_RS03630 | Not Available | - | 764598 - 765146 | 19915.5 |
| nepr family anti-sigma factor | OCA5_RS03635 | Not Available | - | 765146 - 765367 | 7909.44 |
| response regulator | OCA5_RS03640 | Not Available | + | 765599 - 766402 | 29210.0 |
| hypothetical protein | OCA5_RS19085 | Not Available | - | 766425 - 766574 | 5404.67 |
| hypothetical protein | OCA5_RS03645 | Not Available | + | 766674 - 767108 | 14732.0 |
| phage holin family protein | OCA5_RS03650 | Not Available | - | 767208 - 767627 | 14562.4 |
| duf883 family protein | OCA5_RS03655 | Not Available | - | 767723 - 768058 | 11926.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.