Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cpaf family protein | OCA5_RS03565 | Not Available | - | 750929 - 752398 | 53353.1 |
| cpae family protein | OCA5_RS03570 | Not Available | - | 752417 - 753679 | 45160.0 |
| cpad family pilus assembly protein | OCA5_RS03575 | Not Available | - | 753676 - 754419 | 26359.3 |
| type ii and iii secretion system protein family protein | OCA5_RS03580 | Not Available | - | 754440 - 755900 | 50788.8 |
| prepilin peptidase | OCA5_RS03585 | Not Available | - | 756027 - 756551 | 18498.0 |
| flp family type ivb pilin | OCA5_RS03590 | Not Available | - | 756868 - 757032 | 5545.74 |
| flp pilus assembly protein cpab | OCA5_RS03595 | Not Available | + | 757376 - 758194 | 28734.3 |
| tade/tadg family type iv pilus assembly protein | OCA5_RS03600 | Not Available | + | 758348 - 758911 | 20513.7 |
| tade/tadg family type iv pilus assembly protein | OCA5_RS03605 | Not Available | + | 758932 - 759519 | 21005.5 |
| cold-shock protein | OCA5_RS03610 | Not Available | - | 759653 - 759865 | 7505.81 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.