Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| extracellular solute-binding protein | OCA5_RS03515 | Not Available | + | 737891 - 739768 | 71000.0 |
| extracellular solute-binding protein | OCA5_RS03520 | Not Available | + | 739765 - 741627 | 69716.2 |
| microcin c abc transporter permease yejb | OCA5_RS03525 | Not Available | + | 741631 - 742740 | 40781.3 |
| abc transporter permease | OCA5_RS03530 | Not Available | + | 742737 - 743909 | 43457.2 |
| abc transporter atp-binding protein | OCA5_RS03535 | Not Available | + | 743915 - 745552 | 59471.4 |
| c40 family peptidase | OCA5_RS03540 | Not Available | - | 745740 - 746603 | 31046.9 |
| leucyl aminopeptidase family protein | OCA5_RS03545 | Not Available | - | 746596 - 747969 | 48608.3 |
| tetratricopeptide repeat protein | OCA5_RS03550 | Not Available | + | 748117 - 748920 | 28425.7 |
| type ii secretion system f family protein | OCA5_RS03555 | Not Available | - | 748954 - 749931 | 36733.9 |
| type ii secretion system f family protein | OCA5_RS03560 | Not Available | - | 749941 - 750918 | 36136.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.