Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf488 family protein | OCA5_RS03420 | Not Available | + | 710114 - 710662 | 20616.6 |
| ef-hand domain-containing protein | OCA5_RS03425 | Not Available | + | 710915 - 711343 | 14931.2 |
| vit family protein | OCA5_RS03430 | Not Available | - | 711693 - 712394 | 24102.5 |
| efflux rnd transporter periplasmic adaptor subunit | OCA5_RS03435 | Not Available | + | 712795 - 713916 | 39201.3 |
| efflux rnd transporter permease subunit | OCA5_RS03440 | Not Available | + | 713916 - 716993 | 109655.0 |
| site-specific integrase | OCA5_RS03445 | Not Available | - | 717797 - 718723 | 33970.9 |
| site-specific integrase | OCA5_RS03450 | Not Available | - | 718886 - 720565 | 62719.8 |
| helix-turn-helix transcriptional regulator | OCA5_RS03455 | Not Available | - | 720823 - 721068 | 8626.49 |
| hypothetical protein | OCA5_RS18655 | Not Available | - | 721187 - 721924 | 26705.8 |
| tyrosine-type recombinase/integrase | OCA5_RS03460 | Not Available | - | 722131 - 723336 | 44337.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.