Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphonate abc transporter atp-binding protein | OCA5_RS03370 | Not Available | + | 702378 - 703208 | 29591.4 |
| 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | OCA5_RS03375 | Not Available | + | 703216 - 704733 | 54694.4 |
| lema family protein | OCA5_RS03380 | Not Available | + | 705045 - 705701 | 23514.9 |
| tpm domain-containing protein | OCA5_RS03385 | Not Available | + | 705737 - 706591 | 29210.7 |
| tpm domain-containing protein | OCA5_RS03390 | Not Available | + | 706610 - 707113 | 18405.3 |
| hypothetical protein | OCA5_RS03395 | Not Available | + | 707227 - 707844 | 22667.3 |
| hypothetical protein | OCA5_RS03400 | Not Available | + | 708010 - 708393 | 13775.3 |
| dna-3-methyladenine glycosylase i | OCA5_RS03405 | Not Available | - | 708908 - 709354 | 16457.6 |
| hypothetical protein | OCA5_RS19370 | Not Available | + | 709483 - 709893 | 15745.7 |
| duf2945 domain-containing protein | OCA5_RS03415 | Not Available | + | 709895 - 710104 | 7861.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.