Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator | OCA5_RS03220 | Not Available | - | 674514 - 675203 | 25091.2 |
| sensor histidine kinase | OCA5_RS03225 | Not Available | - | 675251 - 677506 | 81432.0 |
| protein-l-isoaspartate o-methyltransferase family protein | OCA5_RS03230 | Not Available | + | 677648 - 678565 | 32547.7 |
| abc transporter atp-binding protein | OCA5_RS03235 | Not Available | + | 679076 - 680941 | 68241.0 |
| pqqd family protein | OCA5_RS03240 | Not Available | + | 680944 - 681204 | 9320.21 |
| lasso peptide biosynthesis b2 protein | OCA5_RS03245 | Not Available | - | 681149 - 681583 | 15950.4 |
| asparagine synthase c-terminal domain-containing protein | OCA5_RS03250 | Not Available | + | 681674 - 683470 | 66817.2 |
| phosphatase pap2 family protein | OCA5_RS03255 | Not Available | + | 683517 - 684107 | 21094.7 |
| duf3147 family protein | OCA5_RS03260 | Not Available | + | 684104 - 684442 | 11716.7 |
| hypothetical protein | OCA5_RS03265 | Not Available | + | 684446 - 684895 | 15799.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.