Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative bifunctional diguanylate cyclase/phosphodiesterase | OCA5_RS03170 | Not Available | + | 662982 - 664931 | 71553.6 |
| coa-acylating methylmalonate-semialdehyde dehydrogenase | OCA5_RS03175 | Not Available | - | 664983 - 666500 | 54408.3 |
| amino acid synthesis family protein | OCA5_RS03180 | Not Available | + | 666721 - 667335 | 21265.6 |
| lysr family transcriptional regulator | OCA5_RS03185 | Not Available | - | 667450 - 668346 | 32819.6 |
| iclr family transcriptional regulator | OCA5_RS03190 | Not Available | - | 668374 - 669165 | 28685.3 |
| branched-chain amino acid abc transporter substrate-binding protein | OCA5_RS03195 | Not Available | + | 669652 - 670806 | 41229.2 |
| branched-chain amino acid abc transporter permease | OCA5_RS03200 | Not Available | + | 670825 - 671739 | 32303.7 |
| branched-chain amino acid abc transporter permease | OCA5_RS03205 | Not Available | + | 671742 - 672884 | 40157.2 |
| abc transporter atp-binding protein | OCA5_RS03210 | Not Available | + | 672881 - 673654 | 28775.8 |
| abc transporter atp-binding protein | OCA5_RS03215 | Not Available | + | 673651 - 674367 | 25187.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.