Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | OCA5_RS03070 | Not Available | + | 638518 - 639951 | 51988.5 |
| Trna-arg | Not Available | Not Available | + | 640082 - 640158 | Not Available |
| abc transporter permease | OCA5_RS03080 | Not Available | - | 640352 - 641248 | 32191.0 |
| abc transporter permease | OCA5_RS03085 | Not Available | - | 641250 - 642203 | 35639.7 |
| abc transporter substrate-binding protein | OCA5_RS03090 | Not Available | - | 642280 - 643767 | 55704.1 |
| abc transporter atp-binding protein | OCA5_RS03095 | Not Available | - | 643948 - 645996 | 74990.8 |
| cu(i)-responsive transcriptional regulator | OCA5_RS03100 | Not Available | - | 646374 - 646817 | 16637.8 |
| heavy metal translocating p-type atpase | OCA5_RS03105 | Not Available | - | 646860 - 649328 | 85912.7 |
| heavy-metal-associated domain-containing protein | OCA5_RS03110 | Not Available | + | 649479 - 649673 | 6626.04 |
| amidase | OCA5_RS03115 | Not Available | - | 649770 - 651077 | 46067.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.