Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5'-methylthioadenosine nucleosidase | OCA5_RS03020 | Not Available | - | 630062 - 630622 | 20458.4 |
| succinyl-diaminopimelate desuccinylase | OCA5_RS03025 | Not Available | - | 630631 - 631785 | 40922.2 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | OCA5_RS03030 | Not Available | - | 631788 - 632633 | 29894.1 |
| pyrimidine 5'-nucleotidase | OCA5_RS03035 | Not Available | - | 632871 - 633563 | 26017.0 |
| acetylglutamate kinase | OCA5_RS03040 | Not Available | - | 633605 - 634492 | 31174.0 |
| duf423 domain-containing protein | OCA5_RS03045 | Not Available | - | 634595 - 634981 | 13122.4 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | OCA5_RS03050 | Not Available | - | 634978 - 635643 | 24232.2 |
| membrane protein insertase yidc | OCA5_RS03055 | Not Available | - | 635729 - 637561 | 67333.4 |
| ribonuclease p protein component | OCA5_RS03060 | Not Available | - | 637565 - 637963 | 14694.8 |
| 50s ribosomal protein l34 | OCA5_RS03065 | Not Available | - | 637993 - 638127 | 5135.43 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.