Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hit domain-containing protein | OCA5_RS02975 | Not Available | - | 620930 - 621343 | 15414.7 |
| Ncrna_class:srp_rna | Not Available | Not Available | + | 621558 - 621654 | Not Available |
| dna polymerase iii subunit gamma/tau | OCA5_RS02980 | Not Available | + | 621749 - 623647 | 68520.7 |
| ybab/ebfc family nucleoid-associated protein | OCA5_RS02985 | Not Available | + | 623662 - 623979 | 11441.1 |
| recombination mediator recr | OCA5_RS02990 | Not Available | + | 623981 - 624586 | 21596.2 |
| ampg family muropeptide mfs transporter | OCA5_RS02995 | Not Available | - | 624587 - 625957 | 48180.2 |
| dna recombination protein rmuc | OCA5_RS03000 | Not Available | - | 626044 - 627246 | 44254.6 |
| peptide deformylase | OCA5_RS03005 | Not Available | + | 627386 - 627901 | 19368.5 |
| methionyl-trna formyltransferase | OCA5_RS03010 | Not Available | + | 628049 - 628981 | 33182.8 |
| trna pseudouridine(38-40) synthase trua | OCA5_RS03015 | Not Available | + | 629157 - 629894 | 27218.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.