Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Afipia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Afipia |
| Species | Afipia carboxidovorans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemolithoautotroph |
| Pathogenicity | Not Available |
Genome Summary
Afipia carboxidovorans OM5
Accession NumberNC_015685.1
Gene Summary
Adenine Count
32940 bp
Thymine Count
32945 bp
Guanine Count
51526 bp
Cytosine Count
49858 bp
Genome Length
167269 bp
Protein-coding Genes
159 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uxaa family hydrolase | OCA5_RS02925 | Not Available | + | 610014 - 611195 | 42452.5 |
| tripartite tricarboxylate transporter permease | OCA5_RS02930 | Not Available | - | 611714 - 613216 | 52558.3 |
| tripartite tricarboxylate transporter tctb family protein | OCA5_RS02935 | Not Available | - | 613213 - 613842 | 22490.4 |
| tripartite tricarboxylate transporter substrate-binding protein | OCA5_RS02940 | Not Available | + | 614067 - 615044 | 34460.6 |
| hydroxyacid dehydrogenase | OCA5_RS02945 | Not Available | + | 615120 - 616052 | 32623.6 |
| ldh family oxidoreductase | OCA5_RS02950 | Not Available | + | 616055 - 617047 | 33303.2 |
| lysr family transcriptional regulator | OCA5_RS02955 | Not Available | - | 617196 - 618080 | 31883.7 |
| yeih family protein | OCA5_RS02960 | Not Available | - | 618106 - 619146 | 36231.4 |
| lrp/asnc family transcriptional regulator | OCA5_RS02965 | Not Available | - | 619277 - 619786 | 18624.7 |
| sugar kinase | OCA5_RS02970 | Not Available | - | 619883 - 620827 | 33462.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.