Clostridium botulinum B1 str. Okra str. okra

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium botulinum B1 str. Okra is a Gram-positive, rod-shaped bacterium that typically exhibits a versatile cellular arrangement, occurring in pairs, singles, or chains. This strain thrives optimally at 37.0°C, reflecting its adaptation to warm environments. As a chemoorganotroph, C. botulinum B1 str. Okra utilizes organic compounds as its energy source, a characteristic that underscores its metabolic versatility. Notably, this microbe is classified as an anaerobe, meaning it primarily thrives in environments devoid of oxygen. The habitat of C. botulinum B1 str. Okra is diverse, indicating its ability to colonize various ecological niches. This adaptability may contribute to its survival and persistence in different environments, potentially influencing its interactions with other microorganisms and its role within microbial communities. Understanding the ecological dynamics of this strain could provide insights into its behavior in both natural and engineered ecosystems, particularly considering the implications of its metabolic processes in nutrient cycling and its potential interactions with other anaerobic microbes.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium botulinum
StrainB1 Okra str. okra

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium botulinum B1 str. Okra str. okra
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles - Chains
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridium botulinum B1 str. Okra str. okra


Gene Summary

Adenine Count

49855 bp

Thymine Count

61200 bp

Guanine Count

14927 bp

Cytosine Count

22798 bp

Genome Length

148780 bp

Protein-coding Genes

192 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinCLD_RS21135Not Available-893 - 10335383.05
hypothetical proteinCLD_RS18790Not Available-1063 - 12908778.25
hypothetical proteinCLD_RS18795Not Available+1649 - 211918622.0
hypothetical proteinCLD_RS18800Not Available-2173 - 281425306.9
hypothetical proteinCLD_RS18805Not Available-2836 - 30698848.74
single-stranded dna-binding proteinCLD_RS18810Not Available-3205 - 365116333.9
rna-guided endonuclease insq/tnpb family proteinCLD_RS18815Not Available-3845 - 498744692.6
nlpc/p60 family proteinCLD_RS18820Not Available-5146 - 617438329.0
hypothetical proteinCLD_RS18825Not Available+6255 - 64406885.12
lema family proteinCLD_RS18830Not Available-6466 - 685815341.8

Displaying genes 1 – 10 of 192 in total

Metabolites

1647 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da

Displaying 1–10 of 1647 metabolites